OBO: Types and relations
Classes | Annotation Properties | Object Properties | Named IndividualsClasses
obo:'acquisition computer'
obo:'acquisition computer' has attributes:
- Label: 'acquisition computer'
- Definition: A Computer used for NMR, can be divided into central processing unit (CPU), consisting of instruction, interpretation and arithmetic unit plus fast access memory, and peripheral devices such as bulk data storage and input and output devices (including, via the interface, the spectrometer). Under software control, the computer controls the RF pulses and gradients necessary to acquire data, and process the data to produce spectra or images. Note that devices such as the spectrometer may themselves incorporate small computers.
- obo:'acquisition computer' is a obo:'computer'.
- Type: owl:Class
- Curation Status: obo:'metadata complete'
- Editor: PERSON:Daniel Schober
obo:'computer cluster'
obo:'computer cluster' has attributes:
- Label: 'computer cluster'
- Definition: A group of linked computers, working together closely so that in many respects they form a single computer.
- obo:'computer cluster' is a obo:'computer'.
- Type: owl:Class
- Curation Status: obo:'metadata complete'
- Editor: PERSON: Erik Segerdell
obo:'chemical solution'
obo:'chemical solution' has attributes:
- Label: 'chemical solution'
- Definition: A material entity that is made up of at least 2 scattered molecular aggregates, one playing the role of solvent and the other one playing the role of solute.
- obo:'chemical solution' is a sio:SIO_010004.
- Type: owl:Class
- Curation Status: obo:'ready for release'
- Editor: PERSON: Philippe Rocca-Serra
obo:'computer'
obo:'computer' has attributes:
- Label: 'computer'
- Definition: A computer is an instrument which manipulates (stores, retrieves, and processes) data according to a list of instructions.
- obo:'computer' is a sio:SIO_000956 and has the following children: obo:'acquisition computer', obo:'computer cluster'.
- Type: owl:Class
- Curation Status: obo:'ready for release'
- Editor: Trish Whetzel
Apple PowerBook, Dell OptiPlex
obo:'quality'
obo:'quality' has attributes:
- Label: 'quality'
- Definition: A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
- obo:'quality' is a sio:SIO_000614 and has the following children: obo:'physical object quality', obo:'process quality'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'speed'
obo:'speed' has attributes:
- Label: 'speed'
- Definition: A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position.
- obo:'speed' is a obo:'movement quality'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'biological sex'
obo:'biological sex' has attributes:
- Label: 'biological sex'
- Definition: An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.
- obo:'biological sex' is a obo:'organismal quality' and has the following child: obo:'phenotypic sex'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'mass'
obo:'mass' has attributes:
- Label: 'mass'
- Definition: A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
- obo:'mass' is a obo:'physical quality'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'rate'
obo:'rate' has attributes:
- Label: 'rate'
- Definition: A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
- obo:'rate' is a obo:'physical quality of a process'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'behavioral quality'
obo:'behavioral quality' has attributes:
- Label: 'behavioral quality'
- Definition: An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation.
- obo:'behavioral quality' is a obo:'organismal quality' and has the following child: obo:'handedness'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'female'
obo:'female' has attributes:
- Label: 'female'
- Definition: A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.
- obo:'female' is a obo:'phenotypic sex'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'male'
obo:'male' has attributes:
- Label: 'male'
- Definition: A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.
- obo:'male' is a obo:'phenotypic sex'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'physical quality'
obo:'physical quality' has attributes:
- Label: 'physical quality'
- Definition: A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
- obo:'physical quality' is a obo:'physical object quality' and has the following children: obo:'mass', obo:'movement quality'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'process quality'
obo:'process quality' has attributes:
- Label: 'process quality'
- Definition: A quality which inheres in an process.
- obo:'process quality' is a obo:'quality' and has the following child: obo:'physical quality of a process'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'physical object quality'
obo:'physical object quality' has attributes:
- Label: 'physical object quality'
- Definition: A quality which inheres in a continuant.
- obo:'physical object quality' is a obo:'quality' and has the following children: obo:'organismal quality', obo:'physical quality'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'hermaphrodite'
obo:'hermaphrodite' has attributes:
- Label: 'hermaphrodite'
- Definition: A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual.
- obo:'hermaphrodite' is a obo:'phenotypic sex'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'flow rate'
obo:'flow rate' has attributes:
- Label: 'flow rate'
- Definition: A physical quality inhering in a bearer by virtue of the bearer's motion characteristic.
- obo:'flow rate' is a obo:'movement quality'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'pseudohermaphrodite'
obo:'pseudohermaphrodite' has attributes:
- Label: 'pseudohermaphrodite'
- Definition: A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of one sex and external sexual characteristics of the other sex.
- obo:'pseudohermaphrodite' is a obo:'phenotypic sex' and has the following children: obo:'female pseudohermaphrodite', obo:'male pseudohermaphrodite'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'male pseudohermaphrodite'
obo:'male pseudohermaphrodite' has attributes:
- Label: 'male pseudohermaphrodite'
- Definition: A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female.
- obo:'male pseudohermaphrodite' is a obo:'pseudohermaphrodite'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'female pseudohermaphrodite'
obo:'female pseudohermaphrodite' has attributes:
- Label: 'female pseudohermaphrodite'
- Definition: A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male.
- obo:'female pseudohermaphrodite' is a obo:'pseudohermaphrodite'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'phenotypic sex'
obo:'phenotypic sex' has attributes:
- Label: 'phenotypic sex'
- Definition:
- obo:'phenotypic sex' is a obo:'biological sex' and has the following children: obo:'female', obo:'hermaphrodite', obo:'male', obo:'pseudohermaphrodite'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'movement quality'
obo:'movement quality' has attributes:
- Label: 'movement quality'
- Definition: A physical quality inhering in a bearer by virtue of the bearer's participation in movement.
- obo:'movement quality' is a obo:'physical quality' and has the following children: obo:'flow rate', obo:'speed'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'organismal quality'
obo:'organismal quality' has attributes:
- Label: 'organismal quality'
- Definition: A quality that inheres in an entire organism or part of an organism.
- obo:'organismal quality' is a obo:'physical object quality' and has the following children: obo:'behavioral quality', obo:'biological sex'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'physical quality of a process'
obo:'physical quality of a process' has attributes:
- Label: 'physical quality of a process'
- Definition:
- obo:'physical quality of a process' is a obo:'process quality' and has the following child: obo:'rate'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'handedness'
obo:'handedness' has attributes:
- Label: 'handedness'
- Definition: A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet.
- obo:'handedness' is a obo:'behavioral quality' and has the following children: obo:'ambidextrous handedness', obo:'left handedness', obo:'right handedness'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'left handedness'
obo:'left handedness' has attributes:
- Label: 'left handedness'
- Definition: Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.
- obo:'left handedness' is a obo:'handedness'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'right handedness'
obo:'right handedness' has attributes:
- Label: 'right handedness'
- Definition: Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.
- obo:'right handedness' is a obo:'handedness'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
obo:'ambidextrous handedness'
obo:'ambidextrous handedness' has attributes:
- Label: 'ambidextrous handedness'
- Definition: Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot.
- obo:'ambidextrous handedness' is a obo:'handedness'.
- Type: owl:Class
- Curation Status: obo:'uncurated'
Annotation Properties
obo:'BFO OWL specification label'
obo:'BFO OWL specification label' has attributes:
- Label: 'BFO OWL specification label'
- Definition: Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.
- obo:'BFO OWL specification label' is a rdfs:label.
- Type: owl:AnnotationProperty
- Curation Status: obo:'uncurated'
obo:'BFO CLIF specification label'
obo:'BFO CLIF specification label' has attributes:
- Label: 'BFO CLIF specification label'
- Definition: Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2
- obo:'BFO CLIF specification label' is a rdfs:label.
- Type: owl:AnnotationProperty
- Curation Status: obo:'uncurated'
obo:'editor preferred term'
obo:'editor preferred term' has attributes:
- Label: 'editor preferred term'
- Definition: The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)
- obo:'editor preferred term' is a owl:AnnotationProperty.
- Type: owl:AnnotationProperty
- Curation Status: obo:'ready for release'
- Editor: PERSON:Daniel Schober
obo:'example of usage'
obo:'example of usage' has attributes:
- Label: 'example of usage'
- Definition: A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not
- obo:'example of usage' is a owl:AnnotationProperty.
- Type: owl:AnnotationProperty
- Curation Status: obo:'ready for release'
- Editor: PERSON:Daniel Schober
obo:'has curation status'
obo:'has curation status' has attributes:
- Label: 'has curation status'
- Definition:
- obo:'has curation status' is a owl:AnnotationProperty.
- Type: owl:AnnotationProperty
- Curation Status: obo:'uncurated'
- Editor: PERSON:Bill Bug
obo:'definition'
obo:'definition' has attributes:
- Label: 'definition'
- Definition: The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
- obo:'definition' is a owl:AnnotationProperty.
- Type: owl:AnnotationProperty
- Curation Status: obo:'ready for release'
- Editor: PERSON:Daniel Schober
obo:'editor note'
obo:'editor note' has attributes:
- Label: 'editor note'
- Definition: An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.
- obo:'editor note' is a owl:AnnotationProperty.
- Type: owl:AnnotationProperty
- Curation Status: obo:'ready for release'
- Editor: PERSON:Daniel Schober
obo:'term editor'
obo:'term editor' has attributes:
- Label: 'term editor'
- Definition: Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people
- obo:'term editor' is a owl:AnnotationProperty.
- Type: owl:AnnotationProperty
- Curation Status: obo:'ready for release'
- Editor: PERSON:Daniel Schober
- Editor Note: 20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.
obo:'alternative term'
obo:'alternative term' has attributes:
- Label: 'alternative term'
- Definition: An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)
- obo:'alternative term' is a owl:AnnotationProperty.
- Type: owl:AnnotationProperty
- Curation Status: obo:'pending final vetting'
- Editor: PERSON:Daniel Schober
obo:'definition source'
obo:'definition source' has attributes:
- Label: 'definition source'
- Definition: Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
- obo:'definition source' is a owl:AnnotationProperty.
- Type: owl:AnnotationProperty
- Curation Status: obo:'ready for release'
- Editor: PERSON:Daniel Schober
obo:'curator note'
obo:'curator note' has attributes:
- Label: 'curator note'
- Definition: An administrative note of use for a curator but of no use for a user
- obo:'curator note' is a owl:AnnotationProperty.
- Type: owl:AnnotationProperty
- Curation Status: obo:'ready for release'
- Editor: PERSON:Alan Ruttenberg
obo:'imported from'
obo:'imported from' has attributes:
- Label: 'imported from'
- Definition: For external terms/classes, the ontology from which the term was imported
- obo:'imported from' is a owl:AnnotationProperty.
- Type: owl:AnnotationProperty
- Curation Status: obo:'pending final vetting'
- Editor: PERSON:Melanie Courtot
obo:'elucidation'
obo:'elucidation' has attributes:
- Label: 'elucidation'
- Definition:
- obo:'elucidation' is a owl:AnnotationProperty.
- Type: owl:AnnotationProperty
- Curation Status: obo:'uncurated'
- Editor: person:Alan Ruttenberg
Object Properties
obo:'is about'
obo:'is about' has attributes:
- Label: 'is about'
- Definition: Is_about is a (currently) primitive relation that relates an information artifact to an entity.
- obo:'is about' is a owl:ObjectProperty.
- Type: owl:ObjectProperty
- Curation Status: obo:'pending final vetting'
- Editor: person:Alan Ruttenberg
This document is about information artifacts and their representations
Named Individuals
obo:'example to be eventually removed'
obo:'example to be eventually removed' has attributes:
- Label: 'example to be eventually removed'
- Definition:
- obo:'example to be eventually removed' is a owl:NamedIndividual.
- Type: owl:NamedIndividual
- Curation Status: obo:'uncurated'
obo:'metadata complete'
obo:'metadata complete' has attributes:
- Label: 'metadata complete'
- Definition: Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.
- obo:'metadata complete' is a owl:NamedIndividual.
- Type: owl:NamedIndividual
- Curation Status: obo:'uncurated'
obo:'organizational term'
obo:'organizational term' has attributes:
- Label: 'organizational term'
- Definition: Term created to ease viewing/sort terms for development purpose, and will not be included in a release
- obo:'organizational term' is a owl:NamedIndividual.
- Type: owl:NamedIndividual
- Curation Status: obo:'uncurated'
obo:'ready for release'
obo:'ready for release' has attributes:
- Label: 'ready for release'
- Definition: Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."
- obo:'ready for release' is a owl:NamedIndividual.
- Type: owl:NamedIndividual
- Curation Status: obo:'uncurated'
obo:'metadata incomplete'
obo:'metadata incomplete' has attributes:
- Label: 'metadata incomplete'
- Definition: Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.
- obo:'metadata incomplete' is a owl:NamedIndividual.
- Type: owl:NamedIndividual
- Curation Status: obo:'uncurated'
obo:'uncurated'
obo:'uncurated' has attributes:
- Label: 'uncurated'
- Definition: Nothing done yet beyond assigning a unique class ID and proposing a preferred term.
- obo:'uncurated' is a owl:NamedIndividual.
- Type: owl:NamedIndividual
- Curation Status: obo:'uncurated'
obo:'pending final vetting'
obo:'pending final vetting' has attributes:
- Label: 'pending final vetting'
- Definition: All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.
- obo:'pending final vetting' is a owl:NamedIndividual.
- Type: owl:NamedIndividual
- Curation Status: obo:'uncurated'
obo:'to be replaced with external ontology term'
obo:'to be replaced with external ontology term' has attributes:
- Label: 'to be replaced with external ontology term'
- Definition: Terms with this status should eventually replaced with a term from another ontology.
- obo:'to be replaced with external ontology term' is a owl:NamedIndividual.
- Type: owl:NamedIndividual
- Curation Status: obo:'uncurated'
- Editor: Alan Ruttenberg
obo:'requires discussion'
obo:'requires discussion' has attributes:
- Label: 'requires discussion'
- Definition: A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.
- obo:'requires discussion' is a owl:NamedIndividual.
- Type: owl:NamedIndividual
- Curation Status: obo:'uncurated'
- Editor: Alan Ruttenberg