Search Class:

NIDM Class Browser

owl:Thing

obo:'entity'

obo:'continuant'

obo:'generically dependent continuant'

obo:'information content entity'

nidm:'Calculated Parameter'

nidm:'Cerebral Blood Flow'nidm:'Cerebral Blood Volume'nidm:'Magnitude'nidm:'Phase'

obo:'clinical history'obo:'code set'

obo:'centrally registered identifier registry'

obo:'conclusion based on data'

obo:'diagnosis of an organism'

obo:'curated information'obo:'data item'

nidm:'Common Data Element'nidm:'Date'nidm:'Personal Data Element'obo:'average value'obo:'cartesian spatial coordinate datum'

obo:'one dimensional cartesian spatial coordinate datum'

obo:'center value'obo:'data about an ontology part'

obo:'curation status specification'obo:'obsolescence reason specification'

obo:'data set'

obo:'classified data set'obo:'clustered data set'obo:'data set of features'obo:'data set of predicted values according to fitted curve'obo:'error corrected data set'obo:'image data set'

obo:'magnetic resonance image data set'obo:'raw image data set'

obo:'normalized data set'

obo:'mean-centered data'

obo:'time sampled measurement data set'

obo:'date process started'obo:'diagnosis'obo:'measurement datum'obo:'measurement datum'obo:'number of errors'obo:'quantitative confidence value'

obo:'FWER adjusted p-value'obo:'p-value'obo:'q-value'

obo:'datum label'

obo:'categorical label'obo:'measurement unit label'

obo:'concentration unit'obo:'frequency unit'obo:'length unit'obo:'mass unit'obo:'pressure unit'obo:'rate unit'obo:'substance unit'obo:'temperature unit'obo:'time unit'obo:'volume unit'obo:'volumetric flow rate unit'

obo:'diagnosis'obo:'directive information entity'

obo:'action specification'obo:'conditional specification'

obo:'rule'

obo:'compliance rule'

obo:'standard compliance rule'

obo:'ethical standard compliance rule'

obo:'stopping rule'

obo:'data format specification'obo:'objective specification'

obo:'assay objective'

obo:'analyte measurement objective'

obo:'data transformation objective'

obo:'averaging objective'obo:'center calculation objective'obo:'class discovery objective'obo:'class prediction objective'obo:'correction objective'

obo:'error correction objective'

obo:'multiple testing correction objective'

obo:'correlation study objective'obo:'curve fitting objective'obo:'data normalization objective'obo:'descriptive statistical calculation objective'obo:'feature extraction objective'obo:'inter-rater reliability objective'obo:'merging objective'obo:'partitioning objective'

obo:'cross validation objective'

obo:'scaling objective'obo:'sequence analysis objective'

obo:'material maintenance objective'obo:'material transformation objective'

obo:'manufacturing objective'obo:'material combination objective'

obo:'adding material objective'

obo:'material separation objective'

obo:'portioning objective'obo:'separation into different composition objective'

obo:'methodology testing objective'

obo:'hardware testing objective'

obo:'specimen collection objective'obo:'training objective'

obo:'plan specification'

nidm:'Protocol'obo:'algorithm'obo:'grant'obo:'programming language'obo:'protocol'

obo:'magnetic resonance pulse sequence protocol'obo:'specimen collection protocol'

obo:'software pipeline'obo:'software'

nidm:'Presentation Software'nidm:'Pulse Sequence'obo:'software application'obo:'software library'obo:'software module'obo:'software script'

obo:'study design'

obo:'clinical study design'obo:'disease specific study design'obo:'factorial design'

obo:'balanced incomplete block design'

obo:'hardware testing design'obo:'in silico design'obo:'intervention design'

obo:'randomized complete block design'obo:'repeated measure design'

obo:'cross over design'

obo:'sequential design'

obo:'loop design'obo:'matched pairs design'obo:'observation design'obo:'parallel group design'obo:'reference design'obo:'replicate design'obo:'time series design'

obo:'target material in specimen specification'

obo:'selection criterion'

obo:'eligibility criterion'

obo:'exclusion criterion'obo:'inclusion criterion'

obo:'age group inclusion criterion'obo:'defined population inclusion criterion'obo:'ethnicity inclusion criterion'obo:'gravidity inclusion criterion'obo:'health status inclusion criterion'

obo:'study design independent variable'

nidm:'Stimulus Presentation File'nidm:'Stimulus Response File'nidm:'b-value File'nidm:'b-vector File'

obo:'document in preparation for publication'obo:'edited document'obo:'publication'

obo:'journal article'

obo:'questionnaire'obo:'report'

obo:'journal article'

obo:'email address'

obo:'email address of specimen collector'

dicom:'Tag'nidm:'DICOM Tag'nidm:'Path'

nidm:'Directory Path'nidm:'File Path'

obo:'centrally registered identifier'

obo:'ORCID identifier'

obo:'family name'obo:'personal name'

obo:'given name'

obo:'postal code'

obo:'zone improvement plan code'

obo:'predicted value'obo:'reason for lack of data item'

obo:'cannot be assessed determination'

obo:'record of missing knowledge'obo:'symbol'

obo:'centrally registered identifier symbol'

obo:'PubMed ID'obo:'courier tracking number'obo:'digital object identifier'obo:'grant identifier'obo:'investigation identifier'obo:'specimen identifier'

obo:'specimen identifier assigned by sequencing facility'obo:'specimen identifier assigned by specimen repository'

obo:'model number'obo:'numeral'

obo:'integer numeral'

obo:'participant identifier'obo:'serial number'obo:'version number'

obo:'testable hypothesis'obo:'textual entity'obo:'value specification'

obo:'categorical value specification'

obo:'ordinal value specification'

obo:'maximum age value specification'obo:'minimum age value specification'obo:'number of errors'obo:'scalar value specification'

obo:'mass value specification'obo:'medication dose value specification'obo:'medication time value specification'

obo:'temperature value specification'obo:'volume value specification'

obo:'region'

obo:'primary structure of DNA macromolecule'

obo:'independent continuant'

obo:'anatomical entity'

obo:'immaterial anatomical entity'obo:'material anatomical entity'

obo:'connected anatomical structure'

obo:'immaterial entity'

obo:'continuant fiat boundary'obo:'geographical location'obo:'immaterial anatomical entity'obo:'site'

obo:GAZ_00000448

obo:'spatial region'

obo:'one-dimensional spatial region'obo:'three-dimensional spatial region'obo:'zero-dimensional spatial region'

obo:'material entity'

nidm:'Acquisition Object'

nidm:'Processed Acquisition Object'nidm:'Raw Acquisition Object'nidm:'Reconstructed Acquisition Object'

obo:'anatomical cluster'obo:'cell'

obo:'experimentally modified cell in vitro'

obo:'cultured cell'

obo:'neural cell'

obo:'neuron'

obo:'chemical entity'

obo:'molecular entity'

obo:'main group molecular entity'

obo:'p-block molecular entity'

obo:'carbon group molecular entity'

obo:'organic molecular entity'

obo:'biomacromolecule'

obo:'information biomacromolecule'

obo:'polynucleotide'

obo:'nucleic acid'

obo:'deoxyribonucleic acid'obo:'genetic material'

obo:'organic amino compound'

obo:'peptide'

obo:'protein'

obo:'chemical solution'obo:'collection of specimens'

obo:'specimens collected in one encounter'

obo:'human specimen set'

obo:'specimens collected longitudinally'obo:'specimens derived from shared ancestor'

obo:'magnetic resonance imaging participant'obo:'manufacturer'obo:'material anatomical entity'

obo:'brain'obo:'cerebral cortex'obo:'cheek'obo:'coronary artery'obo:'heart'obo:'manual digit'obo:'multi-tissue structure'obo:'nasopharynx'obo:'organism substance'

obo:'bodily fluid'

obo:'blood'

obo:'arterial blood'obo:'venous blood'

obo:'cerebrospinal fluid'

obo:'saliva'

obo:'tissue'obo:'vein'

obo:'material information bearer'

obo:'random access memory'

obo:'material supplier'obo:'object aggregate'

nidm:'Auxiliary File Collection'nidm:'DICOM Tag Collection'nidm:'Group'nidm:'Session Object'onli:scale

obo:'object'obo:'organism'

obo:'Archaea'obo:'Bacteria'obo:'Eukaryota'

obo:'Euarchontoglires'

obo:'Homo sapiens'

obo:'specimen collector'

obo:'Viruses'obo:'cellular organism'

obo:'organization'

obo:'biomedical laboratory organization'obo:'clinical study center'obo:'courier organization'obo:'grant agency'obo:'molecular analysis facility organization'

obo:'sequencing facility organization'

obo:'organization of specimen collector'obo:'specimen repository organization'

obo:'population'obo:'processed material'

obo:'cell freezing medium'obo:'culture medium'obo:'cultured cell population'obo:'device'

nidm:'Data Processing Device'

nidm:'Attenuator'nidm:'Current Amplifier'nidm:'Voltage Amplifier'

nidm:'Phantom'nidm:'Signal Filter'

nidm:'Bandpass Filter'nidm:'High-Pass Filter'nidm:'Low-Pass Filter'

nidm:'Signal Generator'nidm:'Stimulus Generator'nidm:'Stimulus Isolator'nidm:'Transmit Coil'obo:'analog-to-digital converter'obo:'assay array'

obo:'microarray'

obo:'assay kit'obo:'computer'obo:'container'

obo:'physical store'obo:'specimen container'obo:'syringe pump'

obo:'cotton swab'obo:'digital-to-analog converter'obo:'environmental control device'

obo:'physical store'

obo:'light emission device'

obo:'light source'

obo:'laser'

obo:'material separation device'

obo:'centrifuge'obo:'filter paper'obo:'microtome'obo:'optical filter'

obo:'band pass filter'

obo:'measurement device'

nidm:'Electrode'nidm:'Electroencephalography Acquisition Device'nidm:'Eye Tracking Device'nidm:'Heart Rate Monitor'nidm:'Image Acquisition Device'

nidm:'Magnetic Resonance Imaging Scanner'nidm:'Positron Emission Tomography Scanner'nidm:'Single Photon Emission Computed Tomography Scanner'nidm:'X-ray Computed Tomography Acquisition Device'

nidm:'Magnetoencephalography Acquisition Device'nidm:'Multi-electrode Array'nidm:'Nuclear Magnetic Resonance Device'nidm:'Receive Coil'nidm:'Respiration Rate Monitor'obo:'DNA sequencer'obo:'NMR instrument'obo:'centrifuge'obo:'image creation device'

obo:'SPECT scanner'obo:'computed tomography scanner'obo:'microscope'

obo:'electron microscope'

obo:'positron emission tomography scanner'obo:'ultrasound machine'

obo:'micro electrode'obo:'nucleic acid sequencer'obo:'patch clamp device'obo:'protein sequencer'obo:'voltage clamp device'

obo:'microscope slide'obo:'pipette'obo:'power supply'obo:'specimen collection device'obo:'syringe'obo:'voltage amplifier'

obo:'preamplifier'

obo:'experimentally modified cell in vitro'

obo:'cultured cell'

obo:'extract'

obo:'nucleic acid extract'

obo:'organ section'obo:'processed specimen'

obo:'blood plasma specimen'obo:'blood serum specimen'obo:'fixed tissue specimen'

obo:'fixed tissue slide specimen'

obo:'H&E-stained fixed tissue slide specimen'

obo:'nucleic acid extract'

obo:'reagent'

obo:'scattered molecular aggregate'obo:'specimen'obo:'system'

obo:'specifically dependent continuant'

obo:'quality'

nidm:'Gender'obo:'biological attribute'

obo:'limb coordination efficacy'

obo:'lower limb coordination efficacy'obo:'upper limb coordination efficacy'

obo:'whole organism stability'

obo:'phenotype'obo:'relational quality'

obo:'quality'

nidm:'Acquisition Object Quality'

nidm:'Acquisition Method'

nidm:'Amperometry'nidm:'Angiography'nidm:'Arterial Spin Labeling'

nidm:'Continuous Arterial Spin Labeling'nidm:'Pseudo Continuous Arterial Spin Labeling'nidm:'Pulsed Arterial Spin Labeling'

nidm:'Current Clamp'nidm:'Dynamic Contrast Enhanced'nidm:'Dynamic Susceptibility Contrast'nidm:'Electrocardiography'nidm:'Electrocorticography'nidm:'Electroencephalography'nidm:'Electromyography'nidm:'Electrooculography'nidm:'Fast Field Echo'nidm:'Field Potential'nidm:'Fluid Attenuated Inversion Recovery'nidm:'Gradient Recalled Echo'

nidm:'Magnetization Prepared Rapid Gradient Echo'nidm:'Spoiled Gradient Recalled Echo'

nidm:'Fast Low Angle Shot'nidm:'T1 Fast Field Echo'

nidm:'Intracranial Electroencephalography'nidm:'Magnetization Transfer'nidm:'Multi-unit Recording'nidm:'Parallel Imaging'nidm:'Patch Clamp'nidm:'Sharp Electrode'nidm:'Simultaneous Multislice'nidm:'Single-unit Recording'nidm:'Spin Echo'

nidm:'Fast Spin Echo'nidm:'Multiple Spin Echo'

nidm:'Steady State Free Precession'

nidm:'Fast Imaging Employing Steady State Acquisition'nidm:'Fast Imaging With Steady State'nidm:'Gradient Recalled Acquisition in Steady State'nidm:'True Fast Imaging With Steady State'

nidm:'Stereoelectroencephalography'nidm:'Voltage Clamp'nidm:'X-ray Computed Tomography'

nidm:'Acquisition Modality'

nidm:'Electroencephalography'nidm:'Electrophysiology Recording'

nidm:'Extracellular Electrophysiology Recording'nidm:'Intracellular Electrophysiology Recording'

nidm:'Magnetic Resonance Imaging'nidm:'Magnetoencephalography'nidm:'Nuclear Magnetic Resonance Spectroscopic Imaging'nidm:'Nuclear Magnetic Resonance Spectroscopy'nidm:'Positron Emission Tomography'nidm:'Single Photon Emission Computed Tomography'nidm:'X-ray'

nidm:'Acquisition Usage Type'

nidm:'Image Usage Type'

nidm:'Anatomical'nidm:'Diffusion Tensor'nidm:'DistortionCorrection'nidm:'Functional'

nidm:'Resting State'nidm:'Task Based'

nidm:'Localization'nidm:'Perfusion'nidm:'Quantitative Susceptibility Mapping'nidm:'Structural'nidm:'Susceptibility Weighted Imaging'

nidm:'Noise Measurement'

nidm:'Image Contrast Type'

nidm:'Blood Oxygen Level Dependent Weighted'nidm:'Diffusion Weighted'nidm:'Flow Weighted'nidm:'Linear Attenuation Coefficient'nidm:'Maximum Intensity Projection'nidm:'Proton Density Weighted'nidm:'Susceptibility Weighted'nidm:'T1 Rho Weighted'nidm:'T1 Weighted'nidm:'T2 Star Weighted'nidm:'T2 Weighted'

nidm:'Instrument Usage Type'

nidm:'Behavioral Instrument'nidm:'Demographics Instrument'nidm:'Informed Consent Instrument'

nidm:'fMRI Design Type'

nidm:'Block-Based Design'nidm:'Event-Related Design'nidm:'Mixed Design'

nidm:'k-space Traversal Scheme'

nidm:'Cartesian'nidm:'Echo Planar'nidm:'Inside-out Spiral'nidm:'Outside-in Spiral'nidm:'Rectilinear'

obo:'charge'obo:'information representation'

obo:'plan'

nidm:'Performed Plan'

obo:'mass'obo:'phenotype'obo:'physical object quality'

obo:'molecular quality'

obo:'concentration of'

obo:'morphology'

obo:'length'obo:'size'

obo:'3-D extent'

obo:'volume'

obo:'structure'

obo:'organismal quality'

nidm:'Ex Vivo'nidm:'In Vitro'nidm:'In Vivo'obo:'behavioral quality'

obo:'handedness'

obo:'ambidextrous handedness'obo:'left handedness'obo:'right handedness'

obo:'biological sex'

obo:'phenotypic sex'

obo:'female'obo:'hermaphrodite'obo:'male'

obo:'viability'

obo:'alive'obo:'dead'

obo:'physical quality'obo:'population quality'

obo:'mixed sex'

obo:'process quality'

obo:'population process quality'

obo:'realizable entity'

obo:'disposition'obo:'plan'

nidm:'Performed Plan'

obo:'role'

obo:'occurrent'

obo:'process boundary'obo:'process'

nidm:'Blood Draw'nidm:'Image Data Reconstruction'nidm:'Model Specification'nidm:'Project'nidm:'Radioactivity'nidm:'Resting'nidm:'Session'nidm:'Task'obo:'biological_process'

obo:'action potential'obo:'cellular process'

obo:'ion channel activity'

obo:'pathologic process'

obo:'planned process'

nidm:'Data Processing'obo:'failed planned process'

obo:'planned process'

nidm:'Series'obo:'assay'

obo:'analyte assay'

obo:'dot blot assay'obo:'microarray assay'

obo:'blood assay'obo:'cytometry assay'

obo:'single-unit recording'

obo:'detection technique'obo:'electrophysiology assay'

obo:'extracellular electrophysiology recording assay'

obo:'electroencephalography'obo:'local field potential recording'obo:'multi-unit recording'obo:'single-unit recording'

obo:'intracellular electrophysiology recording assay'

obo:'current clamp assay'obo:'patch clamp assay'

obo:'cell-attached patch clamp assay'obo:'inside-out patch clamp assay'obo:'outside-out patch clamp assay'obo:'whole-cell patch clamp assay'

obo:'voltage clamp assay'

obo:'cut open oocyte voltage clamp assay'obo:'two electrode voltage clamp assay'

obo:'handedness assay'

obo:'Edinburgh handedness assay'obo:'self reported handedness assessment'

obo:'histological assay'

obo:'histopathology assay'

obo:'imaging assay'

obo:'computed tomography imaging assay'obo:'magnetic resonance imaging assay'obo:'microscopy assay'obo:'positron emission tomography imaging assay'

obo:'in vivo intervention experiment'

obo:'treatment intervention experiment'

obo:'physical examination of individual'

obo:'functional assessment of individual'

obo:'finger taps assessment'obo:'limits of stability assessment'

obo:'observational assessment of individual'

obo:'sequencing assay'obo:'temperature measurement assay'obo:'volume measurement assay'

obo:'assigning a centrally registered identifier'obo:'comparing prediction to measurement'obo:'data transformation'

obo:'averaging data transformation'

obo:'arithmetic mean calculation'obo:'moving average'

obo:'center calculation data transformation'

obo:'arithmetic mean calculation'

obo:'class discovery data transformation'

obo:'dimensionality reduction'

obo:'principal components analysis dimensionality reduction'

obo:'hierarchical clustering'obo:'k-means clustering'obo:'principal component regression'obo:'similarity calculation'

obo:'euclidean distance calculation'obo:'pearson correlation coefficient calculation'

obo:'class prediction data transformation'

obo:'similarity calculation'

obo:'euclidean distance calculation'obo:'pearson correlation coefficient calculation'

obo:'curve fitting data transformation'obo:'data combination'obo:'data imputation'obo:'data partitioning'obo:'descriptive statistical calculation data transformation'

obo:'arithmetic mean calculation'

obo:'discriminant analysis'obo:'error correction data transformation'

obo:'multiple testing correction method'

obo:'false discovery rate correction method'

obo:'Benjamini and Hochberg false discovery rate correction method'obo:'Benjamini and Yekutieli false discovery rate correction method'

obo:'family wise error rate correction method'

obo:'Holm-Bonferroni family-wise error rate correction method'

obo:'generalized family wise error rate correction method'

obo:'feature extraction'obo:'file merge'obo:'image data set analysis'obo:'longitudinal data analysis'obo:'network analysis'

obo:'network graph construction'

obo:'normalization data transformation'

obo:'mean centering'obo:'median centering'

obo:'partitioning data transformation'

obo:'k-means clustering'obo:'statistical model validation'

obo:'boostrapping'obo:'jackknifing method'obo:'leave one out cross validation method'

obo:'regression analysis method'

obo:'multiple linear regression analysis'obo:'partial least square regression analysis'obo:'principal component regression'

obo:'scaling data transformation'

obo:'data visualization'obo:'dataset creating'

obo:'arithmetic mean calculation'obo:'dimensionality reduction'

obo:'principal components analysis dimensionality reduction'

obo:'false discovery rate correction method'

obo:'Benjamini and Hochberg false discovery rate correction method'obo:'Benjamini and Yekutieli false discovery rate correction method'

obo:'family wise error rate correction method'

obo:'Holm-Bonferroni family-wise error rate correction method'

obo:'hierarchical clustering'obo:'k-means clustering'obo:'principal component regression'obo:'similarity calculation'

obo:'euclidean distance calculation'obo:'pearson correlation coefficient calculation'

obo:'document editing'obo:'documenting'

obo:'digital curation'

obo:'drawing a conclusion based on data'

obo:'organism diagnostic process'

obo:'remote patient assessment'

obo:'drawing a conclusion'obo:'freezing'obo:'group assignment'

obo:'group randomization'

obo:'identifier creating process'obo:'image creation'

obo:'array image creation'

obo:'informed consent process'obo:'investigation'obo:'machine learning'

obo:'supervised machine learning'obo:'unsupervised machine learning'

obo:'material maintenance'

obo:'maintaining cell culture'obo:'storage'

obo:'agar stab storage'obo:'freezing storage'obo:'lyophilization storage'obo:'paraffin storage'

obo:'material processing'obo:'publishing process'obo:'selection'

obo:'acquisition'

obo:'information acquisition'obo:'material acquisition'

obo:'human subject enrollment'

obo:'service'

obo:'data service'

obo:'data maintenance service'obo:'data storage service'

obo:'material service'

obo:'material analysis service'

obo:'sequencing service'

obo:'material maintenance service'

obo:'material storage service'

obo:'material processing service'obo:'material transport service'

obo:'specimen collection process'

obo:'collecting specimen from organism'obo:'collecting specimen with swab'obo:'histological sample preparation'obo:'material sampling process'obo:'specimen set collection process'

obo:'study design execution'obo:'study intervention'obo:'subject agrees they understand informed consent document'obo:'training process'obo:'treatment'obo:'validation'

obo:'planning'

Term

Definition

Schema Browser: Class

NIDM Class Browser

Term