This is the Term Resolution page for NIDM-Experiment (NIDM-E), meaning that each term in NIDM-E has a URI that can be referred to when the term is used in a semantic web application. For example, https://incf-nidash.github.io/nidm-experiment/index.html#blooddraw points to the entry on this page for the term nidm:blooddraw, in the nidm namespace.

NIDM-E is a controlled terminology that can be used to describe neuroscience-related experiments. While NIDM-E was initially constructed to describe MRI-based neuroimaging studies, it has expanded to include both general terms needed to describe experiments and studies and domain-specific terms for non-MRI data.

While NIDM-E should currently be considered a "terminology" it is built from collections of terms from existing ontologies and augmented only when a needed term either does not exist in an ontology or the existing term has a different meaning or usage from that relevant for NIDM-E. The basis of NIDM-E is PROV-O, an W3C provenance ontology that has as its base elements, Entities, Activities, and Agents. Other terms have been imported from general ontologies as diverse and the Semanticscience Integrated Ontology (SIO) and the Information Artifact Ontology (IAO), and from domain-specific ontologies such as Ontoneurolog. NIDM-E also contains collections of terms that are used in the Brain Imaging Data Structure (BIDS) and DICOM standards.

Almost all terms in NIDM-E contain either definitions, or in the case of the BIDS terms, descriptions (which are not formal definitions). There are a few exceptions from ontologies in which most imported terms have definitions, but a very few do not. Terms imported into NIDM-E keep the definition from the parent ontology. Non-imported terms, those not found in other ontologies and created specifically for NIDM-E, all have definitions in the form of "X is a Y which Zs", where X is the term, Y is the genus and Z are the differentia (Seppala, Ruttenburg, Smith. Ci.Inf., Brasília, DF, v.46 n.1, p.73-88, jan./abr. 2017).

The terms in NIDM-E are broken into several categories: classes, datatype properties, object properties, annotation properties, and named individuals. Terms considered to be classes are general terms that often describe what an experimental variable is "about", e.g., "age". Datatype properties connect numerical values to Entities, while object properties connect Entities and annotation properties are used to attach a note to an Entity that describes something about the Entity.

NIDM-E should also be considered "under construction". As noted above, the initial terms in NIDM-E were related to MRI-based neuroimaging, but NIDM-E has been constructed such that "hooks" exist that can be used to add terms needed to annotate terms from other modalities. NIDM-E was built by selecting terms needed to annotate real datasets and has expanded as new datasets are considered. As such, NIDM-E is a "practical", rather than "theoretical" terminology and so terms may be missing that may be useful, but were not needed for the datasets upon which NIDM-E was built to describe.

Suggestions for new terms, edits to term parentage, and term definitions are welcome. These can be suggested using the Issues function in GitHub here. Click on "Issues" -> "New issue" and a list of issue-type templates will become available. These can be used to make suggestions and track the discussion and resolution of each issue.

A use case for NIDM-E is shown below to illustrate how the MRI acquisition activity might be modeled.

NIDM-Experiment: Types and relations

Classes | Datatype Properties | Annotation Properties | Object Properties | Named Individuals

Classes

nidm:'Acquisition'

nidm:'Acquisition' has attributes:

nidm:'Blood Draw'

nidm:'Blood Draw' has attributes:

nidm:'Data Processing'

nidm:'Data Processing' has attributes:

nidm:'Image Data Reconstruction'

nidm:'Image Data Reconstruction' has attributes:

nidm:'Model Specification'

nidm:'Model Specification' has attributes:

nidm:'Project'

nidm:'Project' has attributes:

nidm:'Radioactivity'

nidm:'Radioactivity' has attributes:

nidm:'Resting'

nidm:'Resting' has attributes:

nidm:'Series'

nidm:'Series' has attributes:

nidm:'Session'

nidm:'Session' has attributes:

nidm:'Task'

nidm:'Task' has attributes:

nidm:'Acquisition Method'


nidm:'Acquisition Modality'


nidm:'Acquisition Object'

nidm:'Acquisition Object' has attributes:

nidm:'Acquisition Object Quality'

nidm:'Acquisition Object Quality' has attributes:

nidm:'Acquisition Usage Type'

nidm:'Acquisition Usage Type' has attributes:

nidm:'Amperometry'

nidm:'Amperometry' has attributes:

nidm:'Anatomical'

nidm:'Anatomical' has attributes:

nidm:'Angiography'

nidm:'Angiography' has attributes:

nidm:'Arterial Spin Labeling'

nidm:'Arterial Spin Labeling' has attributes:

nidm:'Attenuator'

nidm:'Attenuator' has attributes:

nidm:'AuxiliaryFile'

nidm:'AuxiliaryFile' has attributes:

nidm:'Auxiliary File Collection'

nidm:'Auxiliary File Collection' has attributes:

nidm:'Bandpass Filter'

nidm:'Bandpass Filter' has attributes:

nidm:'Behavioral Instrument'

nidm:'Behavioral Instrument' has attributes:

nidm:'Blood Oxygen Level Dependent Weighted'

nidm:'Blood Oxygen Level Dependent Weighted' has attributes:

nidm:'Calculated Parameter'

nidm:'Calculated Parameter' has attributes:

nidm:'Cartesian'

nidm:'Cartesian' has attributes:

nidm:'Cerebral Blood Flow'

nidm:'Cerebral Blood Flow' has attributes:

nidm:'Cerebral Blood Volume'

nidm:'Cerebral Blood Volume' has attributes:

nidm:'Common Data Element'

nidm:'Common Data Element' has attributes:

nidm:'Continuous Arterial Spin Labeling'

nidm:'Continuous Arterial Spin Labeling' has attributes:

nidm:'Current Amplifier'

nidm:'Current Amplifier' has attributes:

nidm:'Current Clamp'

nidm:'Current Clamp' has attributes:

nidm:'DICOM Tag Collection'

nidm:'DICOM Tag Collection' has attributes:
  • Label: 'DICOM Tag Collection'
  • Definition: A DICOM tag collection is a group of identifiers and their values that are stored in the headers of DICOM-formatted acquisition objects and that record the acquisition and reconstruction parameters for that acquisition object.
  • nidm:'DICOM Tag Collection' is a prov:'Entity'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Data Acquisition Device'


nidm:'Data Element'

nidm:'Data Element' has attributes:

nidm:'Data Processing Device'

nidm:'Data Processing Device' has attributes:

nidm:'Date'

nidm:'Date' has attributes:

nidm:'Demographics Instrument'

nidm:'Demographics Instrument' has attributes:

nidm:'Diffusion Tensor'

nidm:'Diffusion Tensor' has attributes:

nidm:'Diffusion Weighted'

nidm:'Diffusion Weighted' has attributes:

nidm:'DistortionCorrection'

nidm:'DistortionCorrection' has attributes:

nidm:'Dynamic Contrast Enhanced'

nidm:'Dynamic Contrast Enhanced' has attributes:

nidm:'Dynamic Susceptibility Contrast'

nidm:'Dynamic Susceptibility Contrast' has attributes:

nidm:'Echo Planar'

nidm:'Echo Planar' has attributes:

nidm:'Electrocardiography'

nidm:'Electrocardiography' has attributes:

nidm:'Electrocorticography'

nidm:'Electrocorticography' has attributes:

nidm:'Electrode'

nidm:'Electrode' has attributes:

nidm:'Electroencephalography'

nidm:'Electroencephalography' has attributes:

nidm:'Electroencephalography Acquisition Device'

nidm:'Electroencephalography Acquisition Device' has attributes:

nidm:'Electromyography'

nidm:'Electromyography' has attributes:

nidm:'Electrooculography'

nidm:'Electrooculography' has attributes:

nidm:'Electrophysiology Recording'

nidm:'Electrophysiology Recording' has attributes:

nidm:'Electroencephalography'

nidm:'Electroencephalography' has attributes:

nidm:'Ex Vivo'

nidm:'Ex Vivo' has attributes:

nidm:'Extracellular Electrophysiology Recording'

nidm:'Extracellular Electrophysiology Recording' has attributes:

nidm:'Eye Tracking Device'

nidm:'Eye Tracking Device' has attributes:

nidm:'Fast Field Echo'

nidm:'Fast Field Echo' has attributes:

nidm:'Fast Imaging Employing Steady State Acquisition'

nidm:'Fast Imaging Employing Steady State Acquisition' has attributes:

nidm:'Fast Imaging With Steady State'

nidm:'Fast Imaging With Steady State' has attributes:
  • Label: 'Fast Imaging With Steady State'
  • Definition: Fast imaging with steady state precession (FISP) is a gradient recalled echo based magnetic resonance imaging acquisition method in which a series of phase-alternating radiofrequency pulses are applied, in conjunction with spoiler and rewinder gradients, generating free induction decays and a steady-state transverse magnetization, the signal from which is collected.
  • nidm:'Fast Imaging With Steady State' is a nidm:'Steady State Free Precession'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Fast Low Angle Shot'

nidm:'Fast Low Angle Shot' has attributes:

nidm:'Fast Spin Echo'

nidm:'Fast Spin Echo' has attributes:
  • Label: 'Fast Spin Echo'
  • Definition: Fast spin echo is a magnetic resonance imaging acquisition method in which the echo used in the measurement is generated by application of an initial radiofrequency 90 degree pulse and multiple subsequent 180 degree pulses, the latter in conjunction with a different phase-encoding gradient at each refocussed echo.
  • nidm:'Fast Spin Echo' is a nidm:'Spin Echo'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Field Potential'

nidm:'Field Potential' has attributes:

nidm:'File Path'

nidm:'File Path' has attributes:

nidm:'Flow Weighted'

nidm:'Flow Weighted' has attributes:

nidm:'Fluid Attenuated Inversion Recovery'

nidm:'Fluid Attenuated Inversion Recovery' has attributes:
  • Label: 'Fluid Attenuated Inversion Recovery'
  • Definition: Fluid Attenuated Inversion Recovery, which is often known by its acronym, FLAIR, is a magnetic resonance imaging acquisition method in which images are acquired after an initial magnetization inversion pulse is applied and a delay duration that is selected such that the signal from bulk fluid such as cerebral spinal fluid or fluid in lesions is nulled.
  • nidm:'Fluid Attenuated Inversion Recovery' is a nidm:'Acquisition Method'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Functional'

nidm:'Functional' has attributes:

nidm:'Gender'

nidm:'Gender' has attributes:

nidm:'Gradient Recalled Acquisition in Steady State'

nidm:'Gradient Recalled Acquisition in Steady State' has attributes:

nidm:'Gradient Recalled Echo'

nidm:'Gradient Recalled Echo' has attributes:

nidm:'Group'

nidm:'Group' has attributes:

nidm:'Heart Rate Monitor'

nidm:'Heart Rate Monitor' has attributes:

nidm:'High-Pass Filter'

nidm:'High-Pass Filter' has attributes:

nidm:'Image Acquisition Device'

nidm:'Image Acquisition Device' has attributes:

nidm:'Image Contrast Type'

nidm:'Image Contrast Type' has attributes:

nidm:'Image Usage Type'

nidm:'Image Usage Type' has attributes:

nidm:'In Vitro'

nidm:'In Vitro' has attributes:

nidm:'In Vivo'

nidm:'In Vivo' has attributes:

nidm:'Informed Consent Instrument'


nidm:'Inside-out Spiral'

nidm:'Inside-out Spiral' has attributes:

nidm:'Instrument Usage Type'

nidm:'Instrument Usage Type' has attributes:

nidm:'Intracellular Electrophysiology Recording'

nidm:'Intracellular Electrophysiology Recording' has attributes:

nidm:'Intracranial Electroencephalography'

nidm:'Intracranial Electroencephalography' has attributes:

nidm:'Linear Attenuation Coefficient'

nidm:'Linear Attenuation Coefficient' has attributes:

nidm:'Localization'

nidm:'Localization' has attributes:

nidm:'Low-Pass Filter'

nidm:'Low-Pass Filter' has attributes:

nidm:'Magnetic Resonance Imaging'

nidm:'Magnetic Resonance Imaging' has attributes:

nidm:'Magnetic Resonance Imaging Scanner'

nidm:'Magnetic Resonance Imaging Scanner' has attributes:

nidm:'Magnetization Prepared Rapid Gradient Echo'

nidm:'Magnetization Prepared Rapid Gradient Echo' has attributes:

nidm:'Magnetization Transfer'

nidm:'Magnetization Transfer' has attributes:

nidm:'Magnetoencephalography'

nidm:'Magnetoencephalography' has attributes:

nidm:'Magnetoencephalography Acquisition Device'

nidm:'Magnetoencephalography Acquisition Device' has attributes:

nidm:'Magnitude'

nidm:'Magnitude' has attributes:

nidm:'Maximum Intensity Projection'

nidm:'Maximum Intensity Projection' has attributes:

nidm:'Multi-unit Recording'

nidm:'Multi-unit Recording' has attributes:

nidm:'Multi-electrode Array'

nidm:'Multi-electrode Array' has attributes:

nidm:'Multiple Spin Echo'

nidm:'Multiple Spin Echo' has attributes:
  • Label: 'Multiple Spin Echo'
  • Definition: Multiple spin echo is a magnetic resonance imaging acquisition method in which the echoes used in the measurement are generated by application of an initial radiofrequency 90 degree pulse and multiple subsequent 180 degree pulses,and each succeeding echo is used as a k-space line in an image with a longer echo time.
  • nidm:'Multiple Spin Echo' is a nidm:'Spin Echo'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Block-Based Design'

nidm:'Block-Based Design' has attributes:

nidm:'Event-Related Design'


nidm:'Mixed Design'

nidm:'Mixed Design' has attributes:

nidm:'fMRI Design Type'

nidm:'fMRI Design Type' has attributes:

nidm:'Noise Measurement'

nidm:'Noise Measurement' has attributes:

nidm:'Nuclear Magnetic Resonance Device'

nidm:'Nuclear Magnetic Resonance Device' has attributes:

nidm:'Nuclear Magnetic Resonance Spectroscopic Imaging'

nidm:'Nuclear Magnetic Resonance Spectroscopic Imaging' has attributes:
  • Label: 'Nuclear Magnetic Resonance Spectroscopic Imaging'
  • Definition: Nuclear magnetic resonance spectroscopic imaging is an acquisition modality in which radiofrequency electromagnetic radiation is used to excite nuclei of the study participant, the characteristics of the detected signal are used to generate intensity contrast over a restricted (usually grid-like) area, and the resulting signal is displayed as a spectrum for each one of the spatially-resolved areas.
  • nidm:'Nuclear Magnetic Resonance Spectroscopic Imaging' is a nidm:'Acquisition Modality'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Nuclear Magnetic Resonance Spectroscopy'

nidm:'Nuclear Magnetic Resonance Spectroscopy' has attributes:
  • Label: 'Nuclear Magnetic Resonance Spectroscopy'
  • Definition: Nuclear magnetic resonance spectroscopy is an acquisition modality in which radiofrequency electromagnetic radiation is used to excite nuclei of the study participant, the characteristics of the detected signal are used to generate signal intensity contrast over an entire selected volume, and the resulting signal is displayed as a signal spectrum rather than as matrix meant to be a representation of the underlying object.
  • nidm:'Nuclear Magnetic Resonance Spectroscopy' is a nidm:'Acquisition Modality'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Outside-in Spiral'

nidm:'Outside-in Spiral' has attributes:

nidm:'Parallel Imaging'

nidm:'Parallel Imaging' has attributes:

nidm:'Patch Clamp'

nidm:'Patch Clamp' has attributes:
  • Label: 'Patch Clamp'
  • Definition: Patch clamp is an intracellular electrophysiological acquisiiton method in which a micropipette tip is brought near a cell and scution applied drawing a section of cell membrane into the tip in order that ion movement or the intracellular environment can be studied.
  • nidm:'Patch Clamp' is a nidm:'Acquisition Method'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Path'

nidm:'Path' has attributes:

nidm:'Performed Plan'

nidm:'Performed Plan' has attributes:

nidm:'Perfusion'

nidm:'Perfusion' has attributes:

nidm:'Personal Data Element'

nidm:'Personal Data Element' has attributes:

nidm:'Phantom'

nidm:'Phantom' has attributes:
  • Label: 'Phantom'
  • Definition: A phantom is a device that is used in a study as an inanimate study participant from which data is acquired to measure performancde, variability or reproducibility of an data acquisition device.
  • nidm:'Phantom' is a sio:'device'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Phase'

nidm:'Phase' has attributes:

nidm:'Positron Emission Tomography'

nidm:'Positron Emission Tomography' has attributes:

nidm:'Positron Emission Tomography Scanner'

nidm:'Positron Emission Tomography Scanner' has attributes:

nidm:'Processed Acquisition Object'

nidm:'Processed Acquisition Object' has attributes:

nidm:'Protocol'

nidm:'Protocol' has attributes:

nidm:'Proton Density Weighted'

nidm:'Proton Density Weighted' has attributes:

nidm:'Pseudo Continuous Arterial Spin Labeling'

nidm:'Pseudo Continuous Arterial Spin Labeling' has attributes:

nidm:'Pulsed Arterial Spin Labeling'

nidm:'Pulsed Arterial Spin Labeling' has attributes:

nidm:'Quantitative Susceptibility Mapping'

nidm:'Quantitative Susceptibility Mapping' has attributes:

nidm:'Raw Acquisition Object'

nidm:'Raw Acquisition Object' has attributes:

nidm:'Receive Coil'

nidm:'Receive Coil' has attributes:

nidm:'Reconstructed Acquisition Object'

nidm:'Reconstructed Acquisition Object' has attributes:

nidm:'Rectilinear'

nidm:'Rectilinear' has attributes:

nidm:'Respiration Rate Monitor'

nidm:'Respiration Rate Monitor' has attributes:

nidm:'Resting State'

nidm:'Resting State' has attributes:

nidm:'Session Object'

nidm:'Session Object' has attributes:

nidm:'Sharp Electrode'

nidm:'Sharp Electrode' has attributes:
  • Label: 'Sharp Electrode'
  • Definition: Sharp electrode is intracellular electrophysiological acquisition method used for measuring the potential of the intracellular environment with minimal disturbance of that environment, in which a pipette, filled with electrolyte and with a very small opening, is inserted into the cell and the potential measured.
  • nidm:'Sharp Electrode' is a nidm:'Acquisition Method'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Signal Filter'

nidm:'Signal Filter' has attributes:

nidm:'Signal Generator'

nidm:'Signal Generator' has attributes:

nidm:'Simultaneous Multislice'

nidm:'Simultaneous Multislice' has attributes:

nidm:'Single Photon Emission Computed Tomography'

nidm:'Single Photon Emission Computed Tomography' has attributes:
  • Label: 'Single Photon Emission Computed Tomography'
  • Definition: Single-photon emission computed tomography (SPECT)is an acquisition modality in which a gamma-ray-emitting radioisotope is introduced into the study participant and the emitted gamma rays are detected in a series of cross-sectional views, acquired in detectors encircling the study participant, enabling a three-dimensional volume to be reconstructed using a tomographic reconstruction method.
  • nidm:'Single Photon Emission Computed Tomography' is a nidm:'Acquisition Modality'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Single Photon Emission Computed Tomography Scanner'

nidm:'Single Photon Emission Computed Tomography Scanner' has attributes:

nidm:'Single-unit Recording'

nidm:'Single-unit Recording' has attributes:

nidm:'Specified Plan'

nidm:'Specified Plan' has attributes:

nidm:'Spin Echo'

nidm:'Spin Echo' has attributes:

nidm:'Spoiled Gradient Recalled Echo'

nidm:'Spoiled Gradient Recalled Echo' has attributes:

nidm:'Steady State Free Precession'

nidm:'Steady State Free Precession' has attributes:

nidm:'Stereoelectroencephalography'

nidm:'Stereoelectroencephalography' has attributes:

nidm:'Stimulus Generator'

nidm:'Stimulus Generator' has attributes:

nidm:'Stimulus Isolator'

nidm:'Stimulus Isolator' has attributes:
  • Label: 'Stimulus Isolator'
  • Definition: A stimulus isolatator is a device that can deliver a current or voltage waveform that is used to stimulate a sample, cell, or body part, but is isolated from electrical ground, which both decreases the stimulus artifact in the acquired signal and increases the safety for the user.
  • nidm:'Stimulus Isolator' is a sio:'device'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Stimulus Presentation File'

nidm:'Stimulus Presentation File' has attributes:

nidm:'Stimulus Response File'

nidm:'Stimulus Response File' has attributes:

nidm:'Structural'

nidm:'Structural' has attributes:

nidm:'Susceptibility Weighted'

nidm:'Susceptibility Weighted' has attributes:

nidm:'Susceptibility Weighted Imaging'

nidm:'Susceptibility Weighted Imaging' has attributes:

nidm:'T1 Fast Field Echo'

nidm:'T1 Fast Field Echo' has attributes:

nidm:'T1 Rho Weighted'

nidm:'T1 Rho Weighted' has attributes:
  • Label: 'T1 Rho Weighted'
  • Definition: T1 Rho weighted is an image contrast type in which the transvers magnetization is locked into the transverse plane and therefore differences in voxel intensity reflect differences in interactions of the transverse magnetization of the probe molecule with the lattice (rather than the spin-lattice relaxation time) in the underlying sample.
  • nidm:'T1 Rho Weighted' is a nidm:'Image Contrast Type'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'T1 Weighted'

nidm:'T1 Weighted' has attributes:

nidm:'T2 Star Weighted'

nidm:'T2 Star Weighted' has attributes:

nidm:'T2 Weighted'

nidm:'T2 Weighted' has attributes:

nidm:'Task Based'

nidm:'Task Based' has attributes:

nidm:'Transmit Coil'

nidm:'Transmit Coil' has attributes:

nidm:'True Fast Imaging With Steady State'

nidm:'True Fast Imaging With Steady State' has attributes:
  • Label: 'True Fast Imaging With Steady State'
  • Definition: True fast imaging with steady state precession (TrueFISP) is a gradient recalled echo based magnetic resonance imaging acquisition method in which a series of phase-alternating radiofrequency pulses are applied, in conjunction with a balanced set of gradients, generating free induction decays and a steady-state transverse magnetization, the signal from which is collected.
  • nidm:'True Fast Imaging With Steady State' is a nidm:'Steady State Free Precession'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'Voltage Amplifier'

nidm:'Voltage Amplifier' has attributes:

nidm:'Voltage Clamp'

nidm:'Voltage Clamp' has attributes:

nidm:'X-ray'

nidm:'X-ray' has attributes:
  • Label: 'X-ray'
  • Definition: X-ray is an acquisition modality in which an x-ray beam is directed across a body part or sample of interest with film placed on the opposite side resulting in an image in which the contrast is generated by the differential absorption of x-rays.
  • nidm:'X-ray' is a nidm:'Acquisition Modality'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'X-ray Computed Tomography'

nidm:'X-ray Computed Tomography' has attributes:
  • Label: 'X-ray Computed Tomography'
  • Definition: X-ray Computed tomography is an acquisition modality in which an x-ray beam is scanned across a study participant and the resulting data is reconstructed into two-dimensional slices or a three-dimensional volume in which the contrast is generated by the differential absorption of x-rays.
  • nidm:'X-ray Computed Tomography' is a nidm:'Acquisition Method'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

nidm:'X-ray Computed Tomography Acquisition Device'

nidm:'X-ray Computed Tomography Acquisition Device' has attributes:

nidm:'b-value File'

nidm:'b-value File' has attributes:

nidm:'b-vector File'

nidm:'b-vector File' has attributes:

nidm:'k-space Traversal Scheme'

nidm:'k-space Traversal Scheme' has attributes:

nidm:'Presentation Software'

nidm:'Presentation Software' has attributes:

nidm:'Pulse Sequence'

nidm:'Pulse Sequence' has attributes:
  • Label: 'Pulse Sequence'
  • Definition: A pulse sequence is a collection of commands sent to the magnetic resonance imaging or nuclear magnetic resonance hardware to control the excitation of the study participant and the acquisition of data.
  • nidm:'Pulse Sequence' is a prov:'Agent'.
  • Type: owl:Class
  • Curation Status: obo:'requires discussion'

Datatype Properties

nidm:'DICOM Tag'

nidm:'DICOM Tag' has attributes:

nidm:'Applied Filter'

nidm:'Applied Filter' has attributes:

nidm:'Bath Solution'

nidm:'Bath Solution' has attributes:

nidm:'Cell Type'

nidm:'Cell Type' has attributes:

nidm:'Channel Number'

nidm:'Channel Number' has attributes:

nidm:'Electrode Impedance'

nidm:'Electrode Impedance' has attributes:

nidm:'Group Label'

nidm:'Group Label' has attributes:

nidm:'had File Path'

nidm:'had File Path' has attributes:

nidm:'had Image Contrast Type'

nidm:'had Image Contrast Type' has attributes:

nidm:'had Image Usage Type'

nidm:'had Image Usage Type' has attributes:

nidm:hadNumericalValue

nidm:hadNumericalValue has attributes:

nidm:'had Path'

nidm:'had Path' has attributes:

nidm:'Hollow Electrode Solution'

nidm:'Hollow Electrode Solution' has attributes:

nidm:'Number Of Channels'

nidm:'Number Of Channels' has attributes:

nidm:'Recording Location'

nidm:'Recording Location' has attributes:

nidm:'Solution Flow Speed'

nidm:'Solution Flow Speed' has attributes:

Annotation Properties

nidm:hasAcronym

nidm:hasAcronym has attributes:

Object Properties

nidm:'had fMRI Design'

nidm:'had fMRI Design' has attributes:

nidm:hadForProperPart

nidm:hadForProperPart has attributes:

nidm:hadForScale

nidm:hadForScale has attributes:

nidm:hadForSubinstrument

nidm:hadForSubinstrument has attributes:

nidm:hadForVariable

nidm:hadForVariable has attributes:

nidm:wasMeasuredBy

nidm:wasMeasuredBy has attributes:

nidm:wasScaleOf

nidm:wasScaleOf has attributes:

Named Individuals

nidm:'Barnes Akathisia Scale'

nidm:'Barnes Akathisia Scale' has attributes:

nidm:'Calgary Depression Scale'

nidm:'Calgary Depression Scale' has attributes:

nidm:'Category Fluency Test'

nidm:'Category Fluency Test' has attributes:

nidm:'Clinical Global Impression'

nidm:'Clinical Global Impression' has attributes:

nidm:'Continuous Performance Test'

nidm:'Continuous Performance Test' has attributes:

nidm:DelaySemanticVerbalLearningTest

nidm:DelaySemanticVerbalLearningTest has attributes:

nidm:'Delay Visual Figural Learning Test'

nidm:'Delay Visual Figural Learning Test' has attributes:

nidm:EdinburghHandnessTest

nidm:EdinburghHandnessTest has attributes:

nidm:'Facial Emotion Discrimination Test'

nidm:'Facial Emotion Discrimination Test' has attributes:

nidm:'Fagerstrom Test for Nicotine Dependence'

nidm:'Fagerstrom Test for Nicotine Dependence' has attributes:

nidm:'Finger Tapping Test'

nidm:'Finger Tapping Test' has attributes:

nidm:'Letter Fluency Test'

nidm:'Letter Fluency Test' has attributes:

nidm:'Letter Number Span Test'

nidm:'Letter Number Span Test' has attributes:

nidm:'Maze Solving Test'

nidm:'Maze Solving Test' has attributes:

nidm:'North American Reading Test'

nidm:'North American Reading Test' has attributes:

nidm:'Positive and Negative Syndrome Scale'

nidm:'Positive and Negative Syndrome Scale' has attributes:

nidm:'Premorbid Adjustment Scale'

nidm:'Premorbid Adjustment Scale' has attributes:

nidm:'Simpson Angus Rating Scale'

nidm:'Simpson Angus Rating Scale' has attributes:

nidm:SocioeconomicScale

nidm:SocioeconomicScale has attributes:

nidm:SpatialMemorySpanTest

nidm:SpatialMemorySpanTest has attributes:

nidm:'Stroop Test'

nidm:'Stroop Test' has attributes:
  • Label: 'Stroop Test'
  • Definition: This test measures the ease with which a person can shift his or her perceptual set to conform to changing demands and suppress a habitual response in favor of an unusual one. The subject is assessed on his or her ability to read color names compared to the ability to read the color of ink that is not congruent with the color name of the printed words.
  • nidm:'Stroop Test' is a onli:assessment-instrument.
  • Type: owl:NamedIndividual
  • Curation Status: obo:'requires discussion'

nidm:'Symbol Digit Association Test'

nidm:'Symbol Digit Association Test' has attributes:

nidm:'Trails A'

nidm:'Trails A' has attributes:

nidm:'Trails B'

nidm:'Trails B' has attributes:

nidm:'Wisconsin Card Sorting Test'

nidm:'Wisconsin Card Sorting Test' has attributes:
  • Label: 'Wisconsin Card Sorting Test'
  • Definition: The Wisconsin Card Sorting Test is an assessment instrument in which a subject is asked to place cards under one of the four stimulus cards that he or she believes would be a correct strategy, while receiving feedback from the test administrator as to whether the last card was placed correctly or not (though the changes the sorting strategy throughout the test).
  • nidm:'Wisconsin Card Sorting Test' is a onli:assessment-instrument.
  • Type: owl:NamedIndividual
  • Curation Status: obo:'requires discussion'